Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11235928 chr11:73564719 T/C 3.31E-6 368 19.5 20.48 1.87 KM Plot
LIHC rs112369954 chr14:73475161 T/C 6.13E-6 366 20.27 13.17 4.93 KM Plot
LIHC rs112586162 chr7:90298890 AAC/A 2.22E-5 362 14.32 19.42 20.78 KM Plot
LIHC rs112826774 chr14:73469739 G/A 2.52E-6 368 20.27 13.17 4.93 KM Plot
LIHC rs112898530 chr14:73444038 C/T 3.73E-6 368 20.5 13.03 8.73 KM Plot
LIHC rs112933294 chr15:91756134 C/G 4.81E-9 357 20.9 15.67 5.38 KM Plot
LIHC rs113063968 chr14:73593819 T/G 4.53E-6 361 20.5 13.95 4.93 KM Plot
LIHC rs113774566 chr14:73655778 C/T 2.16E-6 364 20.7 13.17 4.93 KM Plot
LIHC rs113875642 chr11:73501256 A/G 2.58E-6 364 19.27 21.2 1.87 KM Plot
LIHC rs113901631 chr14:73674929 G/A 2.92E-6 364 20.5 12.1 4.93 KM Plot
LIHC rs114343496 chr2:49663840 T/G 1.37E-10 358 19.4 20.4 1.13 KM Plot
LIHC rs114593794 chr2:37188433 T/A 8.17E-6 365 20.4 13.2 8.73 KM Plot
LIHC rs11480549 chr20:37003838 G/GTT 2.44E-15 358 20.03 18.97 0.53 KM Plot
LIHC rs11536967 chr20:36991420 A/G 1.22E-15 366 19.95 18.8 0.53 KM Plot
LIHC rs11536968 chr20:36991551 G/A 1.22E-15 366 19.95 18.8 0.53 KM Plot